PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11726
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family G2-like
Protein Properties Length: 335aa    MW: 37695.1 Da    PI: 7.0087
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11726genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.96.2e-30195249156
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                k+r+ W++eLH+rFv+a++qLGG++ AtPk+i+e m+v+gLt+++vkSHLQkYRl+
  Tp57577_TGAC_v2_mRNA11726 195 KQRRSWSSELHRRFVDALQQLGGAH-ATPKQIREKMQVDGLTNDEVKSHLQKYRLH 249
                                79*******************9988.****************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.558192251IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-28192252IPR009057Homeodomain-like
SuperFamilySSF466891.52E-17193252IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-26195249IPR006447Myb domain, plants
PfamPF002491.2E-7197247IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEQQKQQLNL DLTLALASVP KTVSHFLNDV VSQTNNSSEK LSNLDDLLHR LEEEMNKVLA  60
FKRELPLCII LLNNAIETLK EEKEKVRLMK MEDPKNSSDN KKNWMNSVHL WTNENNSKNE  120
DVERCVSKKS NGGGVFMEFN GNSLKEVSQV PSYSLVSEVS HGNSKSGGSS GSSLVRVETQ  180
NQPQPPHPLQ QNSRKQRRSW SSELHRRFVD ALQQLGGAHA TPKQIREKMQ VDGLTNDEVK  240
SHLQKYRLHV RRFPVSSIEE ANKLALYMTQ DHREDTSKGN ISESLSPQGP LTPLLLGGSV  300
KGLSSHGRNS MDADDEQSDC RNWKGDHEQL HEAE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00629PBMTransfer from PK14402.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013453506.11e-158myb-like DNA-binding domain, shaqkyf class protein
TrEMBLA0A072UD381e-158A0A072UD38_MEDTR; Myb-like DNA-binding domain, shaqkyf class protein
STRINGGLYMA01G39040.11e-109(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.15e-56G2-like family protein